Simple helper function to convert a single assay data in
a SummarizedExperiment object into a tidy tibble. If long = FALSE,
a tibble with the same number of rows as the input SummarizedExperiment
is constructed with columns corresponding to the columns of the
SummarizedExperiment and any rowData. If long = TRUE, the assay
data is "tidied" such that each row of the tibble corresponds to a single
value of the assay. When long = TRUE, in addition to rowData, any
colData is also added as additional columns.
# S3 method for SummarizedExperiment tidy(x, assay = SummarizedExperiment::assayNames(x)[1], long = FALSE, ...)
| x | a SummarizedExperiment object. |
|---|---|
| assay | a numeric index or string name specifying the assay to tidy.
If multiple assays are specified, assays will be combined
as separate columns.
(default = |
| long | a logical whether to transform data to long format and
include colData in output rather than default wide format with
dimension similar to original PBMExperiment object.
Ignored and set to TRUE if |
| ... | other parameters for the |
tibble containing values from a single SummarizedExperiment assay along with rowData and optionally colData.